Information for 17-ACTCACATTA (Motif 31)

C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A C G T A C T G C G T A A C T G A C G T
p-value:1e-5
log p-value:-1.350e+01
Information Content per bp:1.964
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.6 +/- 27.0bp
Average Position of motif in Background50.1 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACTCACATTA
NNACTTACCTN-
 A C G T A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACTCACATTA-
TAATCHGATTAC
 A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACTCACATTA-
TAATYNRATTAR
 A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

NOTO/MA0710.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ACTCACATTA--
--GCTAATTAGC
 C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T A C G T
A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACTCACATTA-
GKVTCADRTTWC
 A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACTCACATTA-
GGTCACATGAC
 C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACTCACATTA
TGACTCA-----
 A C G T A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A
A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACTCACATTA-
---CCAATTAA
 C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACTCACATTA--
----YCATTAMC
 C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

FOSL1/MA0477.1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ACTCACATTA
NATGAGTCACC---
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C C G T A A G T C C G T A C G A T A C G T C G T A
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T A C G T