Information for 19-CCTGCTGCCAGGA (Motif 22)

A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C G T A C T G A C T G A T G C C G T A A C T G A T G C C G T A A C T G A T C G
p-value:1e-9
log p-value:-2.242e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.4 +/- 32.6bp
Average Position of motif in Background47.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CCTGCTGCCAGGA
----TTGCCAAG-
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTGCTGCCAGGA
-CTGTTGCTAGGS
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCCAGGA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTGCTGCCAGGA
GGTGYTGACAGS-
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCTGCTGCCAGGA-
----CTTCCNGGAA
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGCCAGGA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGCTGCCAGGA----
--KGTTGCTAGGMAACA
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CCTGCTGCCAGGA
----CTGCCCGCA
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCTGCTGCCAGGA----
---NCTTCCNGGAAGNN
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCTGCTGCCAGGA
---CGTGCCAAG-
 A T G C A G T C C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G A C T G C T G A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T