Information for 1-GATRAAWACCAGA (Motif 2)

C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C T G A C T G C G A T C G A T C G A T C G A T G A C T T C G A A C G T G A T C
p-value:1e-35
log p-value:-8.102e+01
Information Content per bp:1.641
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif11.68%
Number of Background Sequences with motif1156.2
Percentage of Background Sequences with motif2.49%
Average Position of motif in Targets48.2 +/- 24.3bp
Average Position of motif in Background49.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GATRAAWACCAGA-
TGACANARRCCAGRC
 A C G T C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:GATRAAWACCAGA--
-----ATGCCAGACN
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GATRAAWACCAGA---
YTAATTRAWWCCAGATGT
 A C G T A C G T C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:GATRAAWACCAGA-----
--------CCAGACRSVB
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GATRAAWACCAGA-
AGAGRRACAGCWGAC
 A C G T C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GATRAAWACCAGA-------
---CAAATCCAGACATCACA
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:GATRAAWACCAGA---
--------CCAGACAG
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:GATRAAWACCAGA
-------CACAGN
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GATRAAWACCAGA----
-------AACAGATGGT
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GATRAAWACCAGA----
-------AACAGATGGC
 C T A G C G T A A G C T C T G A G C T A G C T A C G T A G C T A T G A C A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C