Information for 13-MCAGAGGCCAGAG (Motif 14)

T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G
Reverse Opposite:
G T A C A C G T A G T C G A C T C T A G T A C G A G T C G A T C A C G T G A T C C G A T A C T G A C T G
p-value:1e-12
log p-value:-2.920e+01
Information Content per bp:1.596
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.75%
Number of Background Sequences with motif1272.1
Percentage of Background Sequences with motif2.74%
Average Position of motif in Targets50.1 +/- 27.0bp
Average Position of motif in Background51.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:MCAGAGGCCAGAG
-CAAAGGTCAG--
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:MCAGAGGCCAGAG----
-CANAGNNCAAAGTCCA
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:MCAGAGGCCAGAG----
--AGAGTCCAAAGTCCA
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:MCAGAGGCCAGAG-
--AAAGATCAAAGG
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T
A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:MCAGAGGCCAGAG--
----AAACCACAGAN
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:MCAGAGGCCAGAG----
---TAGGGCAAAGGTCA
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:MCAGAGGCCAGAG----
--AAAGATCAAAGGGTT
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:MCAGAGGCCAGAG
---AAGGTCAC--
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:MCAGAGGCCAGAG----
---GAGGTCAAAGGTCA
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:MCAGAGGCCAGAG
--TRAGGTCA---
 T G A C G T A C G C T A C T A G C G T A C T A G T C A G A T G C G A T C C T G A T C A G C G T A C A T G
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T