Information for 1-AATTHAATTA (Motif 1)

C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
Reverse Opposite:
C G A T C T G A C G T A A G C T A G C T C A G T T C G A C T G A C G A T G A C T
p-value:1e-37
log p-value:-8.690e+01
Information Content per bp:1.682
Number of Target Sequences with motif166.0
Percentage of Target Sequences with motif19.79%
Number of Background Sequences with motif2961.7
Percentage of Background Sequences with motif6.38%
Average Position of motif in Targets52.4 +/- 26.2bp
Average Position of motif in Background49.4 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-AATTHAATTA-
TAATYNRATTAR
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:2
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--AATTHAATTA
NTAATBNAATTA
 A C G T A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-AATTHAATTA
TAATTTAATTA
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:4
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-AATTHAATTA
TAATTTAATTA
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-AATTHAATTA
TAATTAAATTA
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-AATTHAATTA-
TAATCHGATTAC
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

DUXA/MA0884.1/Jaspar

Match Rank:7
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AATTHAATTA-
CTAATTTAATCAA
 A C G T A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A A C G T
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

DUX4/MA0468.1/Jaspar

Match Rank:8
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AATTHAATTA
TAATTTAATCA
 A C G T C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A
G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.76
Offset:2
Orientation:forward strand
Alignment:AATTHAATTA--
--TCTAATTAAA
 C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A A C G T A C G T
A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AATTHAATTA-
-ADBTAATTAR
 C T G A C G T A G A C T A G C T G T C A C T G A C T G A A C G T G A C T G C T A A C G T
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G