Information for 6-WAGCAAATCACCC (Motif 9)

C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
Reverse Opposite:
A C T G A T C G A C T G A C G T A T C G C G T A A C G T C G A T A C G T A C T G A G T C A G C T G C A T
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.833
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 18.6bp
Average Position of motif in Background25.3 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--WAGCAAATCACCC
ACTAGCCAATCA---
 A C G T A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:WAGCAAATCACCC
---CAAATCACTG
 C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:WAGCAAATCACCC
-AGCCAATCGG--
 C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-WAGCAAATCACCC---
CGACCCAATCAACGGTG
 A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----WAGCAAATCACCC
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--WAGCAAATCACCC
ATATGCAAATNNN--
 A C G T A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--WAGCAAATCACCC-
GNNAGCTAATCCCCCN
 A C G T A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

SREBF1/MA0595.1/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:WAGCAAATCACCC---
------ATCACCCCAC
 C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-WAGCAAATCACCC
WATGCAAATGAG--
 A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--WAGCAAATCACCC
ATATGCAAAT-----
 A C G T A C G T C G T A C T G A A C T G A G T C G T C A C G T A C G T A A C G T A T G C C G T A G T A C T A G C A G T C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T