Information for 3-CTGNTTTHTRTCA (Motif 3)

G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
Reverse Opposite:
C G A T A C T G G C T A G A C T C G T A C T G A G T C A G T C A G C T A A G T C A G T C C G T A A C T G
p-value:1e-38
log p-value:-8.962e+01
Information Content per bp:1.629
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.50%
Number of Background Sequences with motif509.6
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets49.0 +/- 23.6bp
Average Position of motif in Background50.6 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--CTGNTTTHTRTCA
GYCTGGYYTNTGTCA
 A C G T A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGNTTTHTRTCA-
NNAGATNVNWATCTN
 A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTGNTTTHTRTCA-
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGNTTTHTRTCA
GCTGTG--------
 A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGNTTTHTRTCA
GTCWGCTGTYYCTCT
 A C G T A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

GATA2/MA0036.2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGNTTTHTRTCA--
-AGATTCTTATCTGT
 G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A A C G T A C G T
A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGNTTTHTRTCA
-TGATTTATGGC-
 G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGNTTTHTRTCA
-TGATTTATGGCC
 G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTGNTTTHTRTCA
GGTCTGGCAT------
 A C G T A C G T A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGNTTTHTRTCA
TCCTGTTTACA----
 A C G T A C G T G T A C C G A T A C T G T C A G C G A T C A G T C A G T G A C T G C A T C T G A C G A T G T A C G C T A
C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T A C G T A C G T A C G T