Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-125 | -2.884e+02 | 0.0000 | 279.0 | 34.92% | 2899.6 | 6.39% | motif file (matrix) |
svg |
2 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-122 | -2.824e+02 | 0.0000 | 355.0 | 44.43% | 5121.2 | 11.28% | motif file (matrix) |
svg |
3 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-120 | -2.775e+02 | 0.0000 | 288.0 | 36.05% | 3263.4 | 7.19% | motif file (matrix) |
svg |
4 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-111 | -2.559e+02 | 0.0000 | 223.0 | 27.91% | 1966.4 | 4.33% | motif file (matrix) |
svg |
5 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-99 | -2.302e+02 | 0.0000 | 200.0 | 25.03% | 1733.6 | 3.82% | motif file (matrix) |
svg |
6 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-75 | -1.742e+02 | 0.0000 | 83.0 | 10.39% | 244.2 | 0.54% | motif file (matrix) |
svg |
7 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-42 | -9.741e+01 | 0.0000 | 75.0 | 9.39% | 522.3 | 1.15% | motif file (matrix) |
svg |
8 |
| GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-24 | -5.693e+01 | 0.0000 | 44.0 | 5.51% | 310.2 | 0.68% | motif file (matrix) |
svg |
9 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-15 | -3.612e+01 | 0.0000 | 94.0 | 11.76% | 2082.0 | 4.58% | motif file (matrix) |
svg |
10 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-15 | -3.546e+01 | 0.0000 | 70.0 | 8.76% | 1295.5 | 2.85% | motif file (matrix) |
svg |
11 |
| GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-14 | -3.408e+01 | 0.0000 | 28.0 | 3.50% | 220.7 | 0.49% | motif file (matrix) |
svg |
12 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-13 | -3.133e+01 | 0.0000 | 131.0 | 16.40% | 3705.7 | 8.16% | motif file (matrix) |
svg |
13 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-11 | -2.698e+01 | 0.0000 | 38.0 | 4.76% | 543.0 | 1.20% | motif file (matrix) |
svg |
14 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-10 | -2.440e+01 | 0.0000 | 309.0 | 38.67% | 12649.6 | 27.86% | motif file (matrix) |
svg |
15 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-9 | -2.297e+01 | 0.0000 | 141.0 | 17.65% | 4626.1 | 10.19% | motif file (matrix) |
svg |
16 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-9 | -2.294e+01 | 0.0000 | 90.0 | 11.26% | 2471.2 | 5.44% | motif file (matrix) |
svg |
17 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.837e+01 | 0.0000 | 231.0 | 28.91% | 9311.8 | 20.51% | motif file (matrix) |
svg |
18 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.829e+01 | 0.0000 | 153.0 | 19.15% | 5530.4 | 12.18% | motif file (matrix) |
svg |
19 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-7 | -1.795e+01 | 0.0000 | 66.0 | 8.26% | 1768.0 | 3.89% | motif file (matrix) |
svg |
20 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-7 | -1.728e+01 | 0.0000 | 11.0 | 1.38% | 65.0 | 0.14% | motif file (matrix) |
svg |
21 |
| AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.576e+01 | 0.0000 | 43.0 | 5.38% | 999.9 | 2.20% | motif file (matrix) |
svg |
22 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-6 | -1.508e+01 | 0.0000 | 107.0 | 13.39% | 3682.9 | 8.11% | motif file (matrix) |
svg |
23 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-6 | -1.393e+01 | 0.0000 | 17.0 | 2.13% | 225.1 | 0.50% | motif file (matrix) |
svg |
24 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-5 | -1.365e+01 | 0.0000 | 69.0 | 8.64% | 2123.8 | 4.68% | motif file (matrix) |
svg |
25 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.365e+01 | 0.0000 | 286.0 | 35.79% | 12739.8 | 28.06% | motif file (matrix) |
svg |
26 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-5 | -1.350e+01 | 0.0000 | 178.0 | 22.28% | 7208.7 | 15.87% | motif file (matrix) |
svg |
27 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.284e+01 | 0.0000 | 149.0 | 18.65% | 5858.6 | 12.90% | motif file (matrix) |
svg |
28 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-5 | -1.212e+01 | 0.0001 | 82.0 | 10.26% | 2792.3 | 6.15% | motif file (matrix) |
svg |
29 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-4 | -1.117e+01 | 0.0002 | 29.0 | 3.63% | 671.0 | 1.48% | motif file (matrix) |
svg |
30 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.092e+01 | 0.0002 | 31.0 | 3.88% | 753.4 | 1.66% | motif file (matrix) |
svg |
31 |
| AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-4 | -1.090e+01 | 0.0002 | 48.0 | 6.01% | 1416.7 | 3.12% | motif file (matrix) |
svg |
32 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.030e+01 | 0.0004 | 51.0 | 6.38% | 1576.2 | 3.47% | motif file (matrix) |
svg |
33 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-4 | -1.016e+01 | 0.0004 | 33.0 | 4.13% | 860.2 | 1.89% | motif file (matrix) |
svg |
34 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-4 | -1.003e+01 | 0.0005 | 201.0 | 25.16% | 8824.8 | 19.43% | motif file (matrix) |
svg |
35 |
| Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer | 1e-4 | -9.377e+00 | 0.0009 | 34.0 | 4.26% | 936.5 | 2.06% | motif file (matrix) |
svg |
36 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-4 | -9.238e+00 | 0.0010 | 10.0 | 1.25% | 125.8 | 0.28% | motif file (matrix) |
svg |
37 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-3 | -8.383e+00 | 0.0023 | 84.0 | 10.51% | 3215.4 | 7.08% | motif file (matrix) |
svg |
38 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-3 | -8.241e+00 | 0.0025 | 15.0 | 1.88% | 290.6 | 0.64% | motif file (matrix) |
svg |
39 |
| Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.539e+00 | 0.0050 | 23.0 | 2.88% | 598.6 | 1.32% | motif file (matrix) |
svg |
40 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-3 | -7.462e+00 | 0.0052 | 8.0 | 1.00% | 103.1 | 0.23% | motif file (matrix) |
svg |
41 |
| MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.403e+00 | 0.0054 | 28.0 | 3.50% | 800.3 | 1.76% | motif file (matrix) |
svg |
42 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-3 | -7.210e+00 | 0.0064 | 91.0 | 11.39% | 3681.5 | 8.11% | motif file (matrix) |
svg |
43 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-3 | -7.007e+00 | 0.0077 | 177.0 | 22.15% | 8065.9 | 17.76% | motif file (matrix) |
svg |
44 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-3 | -6.985e+00 | 0.0077 | 20.0 | 2.50% | 509.9 | 1.12% | motif file (matrix) |
svg |
45 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -6.795e+00 | 0.0091 | 91.0 | 11.39% | 3732.0 | 8.22% | motif file (matrix) |
svg |
46 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.600e+00 | 0.0108 | 52.0 | 6.51% | 1898.7 | 4.18% | motif file (matrix) |
svg |
47 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.325e+00 | 0.0139 | 120.0 | 15.02% | 5244.1 | 11.55% | motif file (matrix) |
svg |
48 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-2 | -6.307e+00 | 0.0139 | 43.0 | 5.38% | 1515.0 | 3.34% | motif file (matrix) |
svg |
49 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.164e+00 | 0.0156 | 53.0 | 6.63% | 1986.0 | 4.37% | motif file (matrix) |
svg |
50 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -6.082e+00 | 0.0166 | 50.0 | 6.26% | 1854.5 | 4.08% | motif file (matrix) |
svg |
51 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.009e+00 | 0.0175 | 40.0 | 5.01% | 1405.6 | 3.10% | motif file (matrix) |
svg |
52 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-2 | -6.000e+00 | 0.0175 | 45.0 | 5.63% | 1632.9 | 3.60% | motif file (matrix) |
svg |
53 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.943e+00 | 0.0180 | 99.0 | 12.39% | 4243.0 | 9.34% | motif file (matrix) |
svg |
54 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -5.927e+00 | 0.0180 | 30.0 | 3.75% | 972.5 | 2.14% | motif file (matrix) |
svg |
55 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.563e+00 | 0.0254 | 44.0 | 5.51% | 1626.4 | 3.58% | motif file (matrix) |
svg |
56 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-2 | -5.514e+00 | 0.0262 | 56.0 | 7.01% | 2193.9 | 4.83% | motif file (matrix) |
svg |
57 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -5.501e+00 | 0.0262 | 57.0 | 7.13% | 2242.7 | 4.94% | motif file (matrix) |
svg |
58 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -5.404e+00 | 0.0282 | 44.0 | 5.51% | 1641.9 | 3.62% | motif file (matrix) |
svg |
59 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -5.390e+00 | 0.0282 | 80.0 | 10.01% | 3375.3 | 7.43% | motif file (matrix) |
svg |
60 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.327e+00 | 0.0295 | 70.0 | 8.76% | 2891.1 | 6.37% | motif file (matrix) |
svg |
61 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.245e+00 | 0.0315 | 73.0 | 9.14% | 3050.0 | 6.72% | motif file (matrix) |
svg |
62 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.185e+00 | 0.0329 | 73.0 | 9.14% | 3057.6 | 6.73% | motif file (matrix) |
svg |
63 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.156e+00 | 0.0333 | 90.0 | 11.26% | 3908.2 | 8.61% | motif file (matrix) |
svg |
64 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -5.086e+00 | 0.0352 | 44.0 | 5.51% | 1672.7 | 3.68% | motif file (matrix) |
svg |
65 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.029e+00 | 0.0367 | 23.0 | 2.88% | 734.0 | 1.62% | motif file (matrix) |
svg |
66 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-2 | -4.830e+00 | 0.0440 | 7.0 | 0.88% | 127.4 | 0.28% | motif file (matrix) |
svg |
67 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -4.736e+00 | 0.0477 | 79.0 | 9.89% | 3419.3 | 7.53% | motif file (matrix) |
svg |
68 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.625e+00 | 0.0525 | 8.0 | 1.00% | 165.7 | 0.36% | motif file (matrix) |
svg |