Information for 4-ARRRGATTAAGKG (Motif 6)

C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
Reverse Opposite:
A T G C G T A C G T A C A C G T A C G T C G T A C G T A A C G T A G T C A G C T A G C T A G C T A C G T
p-value:1e-18
log p-value:-4.298e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.2 +/- 17.8bp
Average Position of motif in Background28.3 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ARRRGATTAAGKG
-VRGGATTARN--
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ARRRGATTAAGKG
AAGAGGATTAG---
 A C G T C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:ARRRGATTAAGKG
--NGGATTAA---
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ARRRGATTAAGKG
--RGGATTAR---
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ARRRGATTAAGKG
--GGGATTAA---
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ARRRGATTAAGKG
-GNGGATTAGN--
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ARRRGATTAAGKG--
TGTAGGGATTAATTGTC
 A C G T A C G T C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ARRRGATTAAGKG--
TGAAGGGATTAATCATC
 A C G T A C G T C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:ARRRGATTAAGKG
--GGGATTANN--
 C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ARRRGATTAAGKG--
AGAGGGGATTAATTTAT
 A C G T A C G T C G T A C T G A C T G A C T G A A C T G C G T A A C G T C G A T C G T A C G T A A C T G A C T G A T C G A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T