Information for 13-ATYTTTATAGCAA (Motif 16)

C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G G A T C G C A T G C T A G C A T G C T A C G T A C T G A C T G A C G T A C G A T
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.741
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets45.0 +/- 23.7bp
Average Position of motif in Background48.2 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd9/MA0913.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
-TTTTTATTGC--
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
--TTTTATGGCTN
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATYTTTATAGCAA---
-ANATTTTTGCAANTN
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
--TTTTATTGC--
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
-NTTTTATTACN-
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
-NTTTTATGAC--
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATYTTTATAGCAA-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATYTTTATAGCAA-
NGANTTTTATGGCTCN
 A C G T A C G T C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ATYTTTATAGCAA-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATYTTTATAGCAA
--TTTAATTGCN-
 C G T A C G A T G A C T A G C T C G A T C G A T C G T A C G A T C G T A C T A G G T A C C G T A C G T A
A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T