Information for 4-AGCCATTAGC (Motif 4)

G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
Reverse Opposite:
C T A G A T G C C G A T T G C A T C G A G C A T A C T G C T A G T G A C C G A T
p-value:1e-18
log p-value:-4.346e+01
Information Content per bp:1.692
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif6.98%
Number of Background Sequences with motif775.0
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets47.7 +/- 25.2bp
Average Position of motif in Background49.5 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGCCATTAGC
ACCGATTAG-
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGCCATTAGC
GGCCATTAAC
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGCCATTAGC
AAACMATTAN-
 A C G T G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:AGCCATTAGC
-BCMATTAG-
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGCCATTAGC
-GCAATTAG-
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGCCATTAGC
NNCAATTANN
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

HOXB3/MA0903.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGCCATTAGC
ACTAATTAGC
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AGCCATTAGC
--YCATTAMC
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AGCCATTAGC-
AAAAACCATTAAGG
 A C G T A C G T A C G T G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGCCATTAGC
-CCAATTAA-
 G C T A A C T G A G T C T G A C C G T A A G C T A C G T C G T A T A C G G A T C
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T