Information for 6-CCAATTAATT (Motif 4)

T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
Reverse Opposite:
G C T A T C G A A C G T A G C T C G T A C G T A C G A T C A G T C A T G A C T G
p-value:1e-14
log p-value:-3.412e+01
Information Content per bp:1.685
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.93%
Number of Background Sequences with motif1114.8
Percentage of Background Sequences with motif2.46%
Average Position of motif in Targets44.1 +/- 30.6bp
Average Position of motif in Background49.1 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CCAATTAA--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CCAATTAG--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CCAATTAA--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTAATT-
AACAACCAATTAATTC
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

RAX/MA0718.1/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAATT
GCCAATTAAC-
 A C G T T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C A C G T

Prrx2/MA0075.2/Jaspar

Match Rank:6
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CCAATTAA--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
A G T C G A T C T C G A T G C A G A C T G A C T G C T A T C G A A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CCAATTAATT
GCCAATTAGC-
 A C G T T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T

Nobox/MA0125.1/Jaspar

Match Rank:8
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CCAATTAATT
ACCAATTA---
 A C G T T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T A C G T

Shox2/MA0720.1/Jaspar

Match Rank:9
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CTAATTAA--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
A G T C G A C T G C T A G T C A G C A T C A G T G C T A T C G A A C G T A C G T

RAX2/MA0717.1/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAATTAATT
CCAATTAA--
 T G A C G T A C G T C A G C T A C G A T G C A T C T G A T G C A A G C T C G A T
A G T C G A T C T C G A G T C A G A C T A G C T G C T A T C G A A C G T A C G T