Information for 5-AGAATGACAA (Motif 6)

C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A
Reverse Opposite:
A C G T A C G T A C T G C G A T G T A C G T C A C G A T A G C T G A T C A C G T
p-value:1e-9
log p-value:-2.238e+01
Information Content per bp:1.833
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif97.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets58.9 +/- 27.1bp
Average Position of motif in Background48.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGAATGACAA
---TTGACAG
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AGAATGACAA
--RHTGWCAR
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGAATGACAA
--CATGAC--
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGAATGACAA-
---TTGACAGG
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T
A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAATGACAA------
GATATTGACAGCTGCGT
 A C G T C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGAATGACAA----
AAAAATAACAAACGG
 A C G T C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGAATGACAA
-ARNTGACA-
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGAATGACAA-
NTGATTGACAGN
 A C G T C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGAATGACAA-
BTGABTGACAGS
 A C G T C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0108.1_Atf1_2/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGAATGACAA-----
-GAATGACGAATAAC
 C G T A C T A G C T G A G C T A C A G T A C T G C G T A A G T C G T C A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C