Information for 4-CDCTAGRMGS (Motif 3)

T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
Reverse Opposite:
T A G C T G A C C A T G A G C T G A T C C G A T C T G A A T C G G C A T A C T G
p-value:1e-11
log p-value:-2.747e+01
Information Content per bp:1.521
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif206.0
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets40.8 +/- 23.2bp
Average Position of motif in Background49.5 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CDCTAGRMGS
NSCACTYVAV--
 A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CDCTAGRMGS
ACCACTTGAA--
 A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CDCTAGRMGS--
--CCAGACRSVB
 T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CDCTAGRMGS
CCACTTGAA--
 A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CDCTAGRMGS
--CCAGACAG
 T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CDCTAGRMGS
AASCACTCAA---
 A C G T A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CDCTAGRMGS
RSCACTYRAG--
 A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CDCTAGRMGS
MRSCACTYAA---
 A C G T A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CDCTAGRMGS----
CAAATCCAGACATCACA
 A C G T A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CDCTAGRMGS------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T T G A C C G T A T A G C G A C T G C T A C T A G T C G A G T A C A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T