Information for 13-SCTCTATAAA (Motif 25)

A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A
Reverse Opposite:
A C G T A C G T C G A T T C G A A C G T C G T A C A T G C G T A A T C G A T C G
p-value:1e-6
log p-value:-1.452e+01
Information Content per bp:1.773
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif48.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets29.8 +/- 18.8bp
Average Position of motif in Background53.7 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-SCTCTATAAA-
GNCTATAAAAGG
 A C G T A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:SCTCTATAAA--------
---GTATAAAAGGCGGGG
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:SCTCTATAAA--------
---GTATAAAAGGCGGGG
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

MEF2A/MA0052.3/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:SCTCTATAAA----
--TCTAAAAATAGA
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:SCTCTATAAA----
--ACTATAAATAGA
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

PB0090.1_Zbtb12_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--SCTCTATAAA-----
NNGATCTAGAACCTNNN
 A C G T A C G T A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-SCTCTATAAA-
GGCTCYAKCAYC
 A C G T A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

MEF2B/MA0660.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SCTCTATAAA----
--GCTATAAATAGC
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCTCTATAAA---
-NGYCATAAAWCH
 A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-SCTCTATAAA-----
CTACCAATAAAATTCT
 A C G T A T G C A T G C A C G T G T A C A C G T G T C A A G C T C G T A C G T A T G C A A C G T A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T