Information for 11-TAGCATGACAATA (Motif 12)

G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
Reverse Opposite:
A G C T C G T A C A G T A G C T A C T G C A G T A T G C T C G A G A C T C A T G A G T C A G C T C G T A
p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.689
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif22.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.0 +/- 31.6bp
Average Position of motif in Background51.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TAGCATGACAATA
ATTTGCATAACAAAG
 A C G T A C G T G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TAGCATGACAATA
ATTTGCATAACAATG
 A C G T A C G T G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TAGCATGACAATA
----TTGACAG--
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TAGCATGACAATA--
------GACAATGNN
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TAGCATGACAATA
---RHTGWCAR--
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TAGCATGACAATA
---CATGAC----
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TAGCATGACAATA
--NCGTGACN---
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAGCATGACAATA
NNGTCGCGTGNCAC--
 A C G T A C G T A C G T G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TAGCATGACAATA
--ARNTGACA---
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TAGCATGACAATA
----TTGACAGG-
 G A C T T C G A C T A G G T A C C G T A A C G T T A C G G T C A T G A C C T G A G T C A G C A T T C G A
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T