Information for 10-CCCAGCCAGC (Motif 8)

A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
Reverse Opposite:
C A T G T A G C A C G T A T C G A C T G A T G C C G A T A T C G T A C G A T C G
p-value:1e-10
log p-value:-2.418e+01
Information Content per bp:1.768
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif810.5
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets58.9 +/- 25.6bp
Average Position of motif in Background49.3 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC
-BCAGACWA-
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCCAGCCAGC
--CAGCC---
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC
-CCAGACAG-
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGCCAGC--
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T A C G T A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCCAGCCAGC
---TGCCAA-
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC------
-SCAGYCADGCATGAC
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC-
-CCAGACRSVB
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCAGCCAGC
CACAGN----
 A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGC---
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGC---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A T G C A T G C A T G C C G T A T A C G A G T C A T G C G T C A A T C G G T A C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A