Information for 4-CCAGCATACTGCATGG (Motif 13)

A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C G T C A A C G T A C T G A G T C G T C A C T A G A C G T C G T A A C G T A C T G A G T C A C G T A C T G A C T G
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.912
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.7 +/- 29.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCATACTGCATGG
WYATGCATWATGCAT--
 A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CCAGCATACTGCATGG--
-AATCGCACTGCATTCCG
 A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G A C G T A C G T
A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCATACTGCATGG
TACCCGCATN--------
 A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:4
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCATACTGCATGG
GTACCCGCATN--------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCATACTGCATGG
TCGTACCCGCATCATT-----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CCAGCATACTGCATGG
-CAGCC----------
 A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:7
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCATACTGCATGG
CTGAGTCAGCAATTT------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CCAGCATACTGCATGG
-ATGAATWATTCATGA
 A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCATACTGCATGG
GTCAGCANNTN------
 A C G T A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CCAGCATACTGCATGG
-GAAAAAATTGCAAGG
 A G T C A G T C C G T A A C T G A G T C G T C A C G A T C G T A A G T C A C G T A C T G A G T C C G T A A C G T A C T G A C T G
A C G T T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G