Information for 2-TCTTGRATGGGCTTAG (Motif 7)

A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
Reverse Opposite:
T G A C G A C T C T G A C T G A C A T G T A G C G T A C G A T C G C T A A C G T A G C T G T A C G T C A C T G A C T A G T C G A
p-value:1e-14
log p-value:-3.258e+01
Information Content per bp:1.600
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.78%
Number of Background Sequences with motif334.3
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets40.4 +/- 24.6bp
Average Position of motif in Background51.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TCTTGRATGGGCTTAG
-----AAGAGGATTAG
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TCTTGRATGGGCTTAG
CCTTTTATAGNC----
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCTTGRATGGGCTTAG----
---TGAACCGGATTAATGAA
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCTTGRATGGGCTTAG----
---TGAACCGGATTAATGAA
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCTTGRATGGGCTTAG
--GTTAATGGCC----
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:TCTTGRATGGGCTTAG-
---------GGATTAGC
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:TCTTGRATGGGCTTAG
--------NGGATTAN
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:TCTTGRATGGGCTTAG-
--------GGGATTANN
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:TCTTGRATGGGCTTAG
-------NGGGATTA-
 A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TCTTGRATGGGCTTAG
NTTNTATGAATGTGNNC--
 A C G T A C G T A C G T A C G T A G T C G A C T C A G T C A T G T C G A T C G A C G A T C T A G C A T G A T C G G T A C A G C T A G C T C T G A A C T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T