Information for 4-CAGAGGTCAG (Motif 6)

G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
Reverse Opposite:
A G T C A G C T T A C G G C T A G T A C T A G C A C G T A G T C G A C T C T A G
p-value:1e-14
log p-value:-3.307e+01
Information Content per bp:1.654
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif7.78%
Number of Background Sequences with motif1267.2
Percentage of Background Sequences with motif2.65%
Average Position of motif in Targets54.9 +/- 22.2bp
Average Position of motif in Background51.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CAGAGGTCAG
CAAAGGTCAG
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.86
Offset:1
Orientation:forward strand
Alignment:CAGAGGTCAG
-AGRGGTCA-
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CAGAGGTCAG---
CAAAGGTCAAGGG
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAGAGGTCAG
-TRAGGTCA-
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGTCAG---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGTCAG---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CAGAGGTCAG
---AGGTCA-
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGTCAG----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGTCAG
GAGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CAGAGGTCAG
--AAGGTCAC
 G A T C C T G A T C A G T G C A A T C G C A T G C G A T A T G C T C G A T C A G
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C