Information for 3-TAATBSVATT (Motif 4)

A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T
Reverse Opposite:
T C G A C G T A C A G T A T C G T A C G T A G C G T C A C G A T C G A T T C G A
p-value:1e-14
log p-value:-3.386e+01
Information Content per bp:1.584
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif12.89%
Number of Background Sequences with motif2778.6
Percentage of Background Sequences with motif5.81%
Average Position of motif in Targets45.3 +/- 27.0bp
Average Position of motif in Background50.1 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TAATBSVATT--
TAATTNVATTAN
 A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TAATBSVATT-
YTAATYNRATTA
 A C G T A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TAATBSVATT-
TAATTTAATTA
 A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TAATBSVATT--
TAATCHGATTAC
 A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TAATBSVATT-
TAATTTAATTA
 A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TAATBSVATT-
TAATTTAATTA
 A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

PH0126.1_Obox6/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TAATBSVATT--
CNATAATCCGNTTNT
 A C G T A C G T A C G T A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TAATBSVATT
CTAATCCTCTT
 A C G T A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAATBSVATT--
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAATBSVATT--
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A C A G T A T C G A T G C T A G C G T C A C G A T A G C T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A