Information for 13-CTGGAGAGCG (Motif 29)

A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
Reverse Opposite:
A T G C A C T G A G T C C A G T A G T C A C G T A T G C G A T C C T G A C T A G
p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.831
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif168.8
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets36.2 +/- 28.6bp
Average Position of motif in Background50.6 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGGAGAGCG
BTBRAGTGSN
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGGAGAGCG
CTYRAGTGSY
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGGAGAGCG-
CTTGAGTGGCT
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGGAGAGCG-
-TTGAGTGSTT
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Bcl6/MA0463.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTGGAGAGCG
TTTCCTAGAAAGCA
 A C G T A C G T A C G T A C G T A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGGAGAGCG-
TTTCCTGGAAAGNNN
 A C G T A C G T A C G T A C G T A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G A C G T
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CTGGAGAGCG
-----CAGCC
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGGAGAGCG-------
-TGGCGCGCGCGCCTGA
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTGGAGAGCG
CCWGGAATGY-
 A C G T A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTGGAGAGCG
---CGGAGC-
 A G T C A G C T C T A G A T C G C G T A C T A G G T C A C T A G G T A C A T C G
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T