Information for 6-TGGHCAGAAVABCAAG (Motif 23)

A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
Reverse Opposite:
G T A C C A G T A G C T A C T G T A G C A C G T A C G T A C G T A G C T A G T C A C G T A T C G C G T A A T G C A G T C C G T A
p-value:1e-9
log p-value:-2.123e+01
Information Content per bp:1.772
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.2 +/- 26.4bp
Average Position of motif in Background61.0 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA/MA0729.1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGHCAGAAVABCAAG-
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

E2F7/MA0758.1/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGGHCAGAAVABCAAG
TTTTGGCGGGAAAA-----
 A C G T A C G T A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGGHCAGAAVABCAAG
ATGGGGTGAT-------
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGGHCAGAAVABCAAG
AAGGTCAAAAGGTCAA-
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGGHCAGAAVABCAAG
ATGGGGTGAT-------
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TGGHCAGAAVABCAAG
TTTGGCGGGAAA------
 A C G T A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGGHCAGAAVABCAAG
TGGCGGGAAAHB----
 A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TGGHCAGAAVABCAAG
GTGGCGTGACNG-----
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TGGHCAGAAVABCAAG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:TGGHCAGAAVABCAAG
---CCAGACRSVB---
 A C G T A C T G A T C G G C A T A T G C C G T A A C T G C T G A G T C A T C G A C G T A A C T G A G T C C T G A G T C A A C T G
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T