Information for 2-VVGAACAAAGGVG (Motif 2)

T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
Reverse Opposite:
A T G C A G C T A T G C G T A C C G A T A C G T A C G T C A T G C G A T A C G T A T G C A T G C A G T C
p-value:1e-18
log p-value:-4.211e+01
Information Content per bp:1.639
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif13.78%
Number of Background Sequences with motif2747.2
Percentage of Background Sequences with motif5.75%
Average Position of motif in Targets47.7 +/- 24.4bp
Average Position of motif in Background50.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
-GGAACAAAGR--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--VVGAACAAAGGVG--
AGAAGAACAAAGGACTA
A C G T A C G T T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--VVGAACAAAGGVG--
ATAAGAACAAAGGACTA
A C G T A C G T T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
-VRRACAAWGG--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
-AAAACAAAGG--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
---AACAAAGG--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
---RACAAWGG--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
--GAACAATGGN-
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.87
Offset:4
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
----ACAAAG---
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:VVGAACAAAGGVG
-RNAACAATGG--
T C A G T A C G T A C G G T C A C G T A G A T C C G T A G T C A C G T A A C T G T A C G T C G A T A C G
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T