Information for 3-CAGCACCCTGGACAGA (Motif 17)

A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
Reverse Opposite:
A C G T A G T C A C G T A C T G A C G T A G T C A G T C T C G A A T C G A C T G A C T G A C G T C T A G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.389e+01
Information Content per bp:1.922
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.2 +/- 21.0bp
Average Position of motif in Background87.8 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCCTGGACAGA---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCCTGGACAGA---
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAGCACCCTGGACAGA
-----CCAGGAACAG-
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.50
Offset:8
Orientation:forward strand
Alignment:CAGCACCCTGGACAGA
--------TTGACAGC
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CAGCACCCTGGACAGA
----WDNCTGGGCA--
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CAGCACCCTGGACAGA
--------TTGACAGG
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CAGCACCCTGGACAGA
--------TTGACAG-
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.47
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCACCCTGGACAGA
TGAGTCAGCA-----------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.47
Offset:10
Orientation:reverse strand
Alignment:CAGCACCCTGGACAGA
----------CACAGN
 A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.46
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCCTGGACAGA
TCAGNGAGCGTGAC---
 A C G T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T A G C A G C T A C T G A C T G C G T A A G T C C G T A C T A G G T C A
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T A C G T