Information for 3-YCYKCCTTCTTGTTTC (Motif 4)

A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
Reverse Opposite:
A T C G C T G A C G T A C T G A G T A C C G T A C G T A C T A G T G C A C T G A A C T G A T C G G T C A C T A G A C T G C T A G
p-value:1e-15
log p-value:-3.605e+01
Information Content per bp:1.791
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.9 +/- 17.3bp
Average Position of motif in Background38.5 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC
GCCGCCATCTTG----
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC
GCNGCCATCTTG----
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC-----
-------TTTTTTTTCNNGTN
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC--
---NTNTTGTTGTTTGTN
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C A C G T A C G T
A C G T A C G T A C G T G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.55
Offset:8
Orientation:forward strand
Alignment:YCYKCCTTCTTGTTTC
--------ATTGTT--
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC---
--TNNTCCTTTGTTCTNNT
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C A C G T A C G T A C G T
A C G T A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC----
---CNNNTATTGTTCNNNNN
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:YCYKCCTTCTTGTTTC
-----NCCATTGTTC-
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:YCYKCCTTCTTGTTTC
------CCATTGTTNY
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:YCYKCCTTCTTGTTTC-
--------ATTGTTTAN
 A G T C A G T C A G T C A C G T A T G C A G T C A G C T A C G T A G T C A C G T A C G T A C T G A G C T A C G T A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C