Information for 5-CCGCCATKTT (Motif 3)

A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T
Reverse Opposite:
T C G A G C T A T G C A C T G A C A G T T C A G C A T G G A T C A T C G T A C G
p-value:1e-17
log p-value:-4.035e+01
Information Content per bp:1.516
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif4.73%
Number of Background Sequences with motif422.7
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets56.0 +/- 25.0bp
Average Position of motif in Background55.9 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATKTT-
GCNGCCATCTTG
 A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATKTT-
GCCGCCATCTTG
 A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATKTT
GTCCGCCATTA-
 A C G T A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CCGCCATKTT
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CCGCCATKTT-
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATKTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCGCCATKTT---
---CCATTGTTYB
 A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCGCCATKTT-
---CCTTTGTT
 A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGCCATKTT--
--NCCATTGTTY
 A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T A C G T
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATKTT-----
TGTTCCCATTGTGTACT
 A C G T A C G T A T G C T A G C C T A G G T A C A G T C G T C A G A C T A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T