Information for 12-GGAAATTCCAATTGTT (Motif 16)

C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T
Reverse Opposite:
C G T A C T G A G T A C C G T A G C T A A C G T A C G T A C T G A T C G G T C A T G C A C G A T A C G T A C G T G T A C A G T C
p-value:1e-10
log p-value:-2.325e+01
Information Content per bp:1.752
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 27.6bp
Average Position of motif in Background75.9 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAAATTCCAATTGTT
GGAAATTCCC------
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCAATTGTT
GGAAATTCCC------
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCAATTGTT
GGAAANCCCC------
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCAATTGTT
GGGAAATCCCCN-----
 A C G T C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGAAATTCCAATTGTT----
---TGTTCCCATTGTGTACT
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.59
Offset:10
Orientation:forward strand
Alignment:GGAAATTCCAATTGTT-
----------ATTGTTA
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GGAAATTCCAATTGTT-
--------CCATTGTTC
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GGAAATTCCAATTGTT----
----ANNTCCATTGTTCNNN
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGAAATTCCAATTGTT-------
-TNNANNTCTATTGTTNTNNANN
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GGAAATTCCAATTGTT-----
----ANNTCTATTGTTCNNNA
 C T A G A C T G C G T A C G T A C G T A A C G T A C G T A T G C G T A C G T C A C G T A C G A T A C G T A C T G A G C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A