Information for 12-WRGTGATTTA (Motif 49)

C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A
Reverse Opposite:
A G C T T G C A G T C A C T G A C A G T G T A C G T C A T G A C G A C T G C T A
p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.678
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif386.3
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets51.8 +/- 26.1bp
Average Position of motif in Background49.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:WRGTGATTTA-----
--NTGATTTATGGCC
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:WRGTGATTTA----
---TGATTTATGGC
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:WRGTGATTTA-----
---TGATTTATGGCC
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:WRGTGATTTA-----
---TGATTTATGGCC
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:WRGTGATTTA
CNGTGATTTN
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-WRGTGATTTA-----
NNANTGATTGATNTTN
 A C G T C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-WRGTGATTTA-----
NNANTGATTGATNNNN
 A C G T C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:WRGTGATTTA---
-TTTGATTGATGN
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:WRGTGATTTA---
---TGATTGATGA
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:WRGTGATTTA
--TTGATTGN
 C G A T C T G A A C T G A C G T A C T G G T C A A G C T A C G T A C G T C T G A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G