Information for 22-AAGGRAGATCTCTCCC (Motif 40)

C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C
Reverse Opposite:
T A C G C A T G A T C G G T C A T A C G C G T A C T A G T C G A C G A T A T G C A G C T A G C T G A T C A G T C A G C T A G C T
p-value:1e-8
log p-value:-1.987e+01
Information Content per bp:1.633
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif57.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets61.2 +/- 27.3bp
Average Position of motif in Background47.5 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AAGGRAGATCTCTCCC
-AGGVNCCTTTGT---
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGGRAGATCTCTCCC--
-NNNCTGATATCTCNNNN
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T A C G T
A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:AAGGRAGATCTCTCCC---
---------CTGTTCCTGG
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:AAGGRAGATCTCTCCC-
TNNNATGATTTCNNCNN
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.47
Offset:5
Orientation:forward strand
Alignment:AAGGRAGATCTCTCCC
-----AAATCACTGC-
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C
A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:6
Score:0.47
Offset:8
Orientation:forward strand
Alignment:AAGGRAGATCTCTCCC--
--------ATTTTCCATT
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:AAGGRAGATCTCTCCC---
---NNNNTTGTGTGCTTNN
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.46
Offset:1
Orientation:reverse strand
Alignment:AAGGRAGATCTCTCCC
-AAGGATATNTN----
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.46
Offset:0
Orientation:forward strand
Alignment:AAGGRAGATCTCTCCC
VAGRACAKWCTGTYC-
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.46
Offset:8
Orientation:forward strand
Alignment:AAGGRAGATCTCTCCC--
--------ATTTTCCATT
 C T G A T C G A C T A G C A T G T C G A T C G A T A C G G C T A A G C T A G T C C G A T A T G C A C G T T A G C G T A C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T