Information for 7-SAAATTKCAAATAAAA (Motif 5)

A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A
Reverse Opposite:
C G A T C G A T A G C T C G A T C G T A C G A T A C G T C G A T A C T G G T A C T C G A C G T A A G C T C G A T A C G T A T C G
p-value:1e-10
log p-value:-2.402e+01
Information Content per bp:1.729
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif25.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.7 +/- 24.8bp
Average Position of motif in Background55.9 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.64
Offset:7
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA-
-------CCAATAAAAA
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA
------NCYAATAAAA
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.63
Offset:7
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA-
-------CCAATAAAAA
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA----
----CTACCAATAAAATTCT
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.63
Offset:7
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA-
-------CCAATAAAAC
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PB0116.1_Elf3_2/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA-----
----GTTCAAAAAAAAAATTC
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA----
----AACCCAATAAAATTCG
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA
-CAATTGCAAAAATAT
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A
A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:SAAATTKCAAATAAAA
------CCYMATAAAA
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

POU1F1/MA0784.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SAAATTKCAAATAAAA
-AATATGCAAATTAG-
 A T G C C G T A C G T A C T G A C G A T A C G T A C T G G T A C C G T A C G T A C G T A C G A T C G T A C T G A C G T A C G T A
A C G T C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G A C G T