Information for 11-GTCCCCAGCAGGT (Motif 9)

A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C T A G C A C G T A C T G A G T C A C G T A C T G A C T G C T A G A C T G C T G A G T A C
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.5 +/- 31.3bp
Average Position of motif in Background51.1 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GTCCCCAGCAGGT--
---CACAGCAGGGGG
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTCCCCAGCAGGT--
CCACACAGCAGGAGA
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTCCCCAGCAGGT----
--DCHCAGCAGGRGGCC
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTCCCCAGCAGGT
--DCTCAGCAGG-
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCCCCAGCAGGT--
CCACACAGCAGGAGA
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTCCCCAGCAGGT--
GAGCACAGCAGGACA
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCCCCAGCAGGT
-TCCCCA------
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T
A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GTCCCCAGCAGGT----
-----SDGCAGGTGCNS
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GTCCCCAGCAGGT--
------AACAGGTGT
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTCCCCAGCAGGT-
----CCAGCTGTTN
 A C T G A G C T A G T C A G T C A G T C A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A