Information for 23-GCCTSCTGARCKM (Motif 49)

A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
Reverse Opposite:
C A T G G T C A C T A G A G C T A C G T A G T C C G T A A C T G A T G C C G T A A C T G C T A G A G T C
p-value:1e-5
log p-value:-1.156e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.3 +/- 29.5bp
Average Position of motif in Background39.6 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCTSCTGARCKM
-CCTGCTGAGH--
 A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GCCTSCTGARCKM
TNTCCTGCTGTGNNG
 A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCTSCTGARCKM
NNTCCTGCTGTGNNN
 A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCTSCTGARCKM
CCCCCTGCTGTG---
 A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCTSCTGARCKM
TCNCCTGCTGNGNNN
 A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCTSCTGARCKM
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCCTSCTGARCKM
---TGCTGACTCA
 A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCCTSCTGARCKM
AATTTGCTGAC---
 A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCCTSCTGARCKM
ANCAGCTG-----
 A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCTSCTGARCKM
ATTGCCTCAGGCAAT-
 A C G T A C G T A C G T A C T G A G T C A G T C C G A T A T C G A G T C A C G T A C T G T G C A C T G A A G T C A C G T G T A C
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T