Information for 2-TGCAAGTGCAGCA (Motif 3)

C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
Reverse Opposite:
A G C T A T C G A G T C A C G T A C T G A G T C G C T A A G T C C G A T A C G T C T A G A T G C G T C A
p-value:1e-12
log p-value:-2.836e+01
Information Content per bp:1.779
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets32.1 +/- 14.7bp
Average Position of motif in Background60.8 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGTGCAGCA
SDGCAGGTGCNS--
 A C G T C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTGCAGCA
NTCAAGTGG----
 C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTGCAGCA
NTCAAGTGGN---
 C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGTGCAGCA-
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

HES7/MA0822.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCAAGTGCAGCA
TGGCACGTGCCA--
 A C G T C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGTGCAGCA
NGKCACGTGM----
 A C G T C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTGCAGCA
NNCAGGTGCG---
 C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTGCAGCA
GACAGGTGTN---
 C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTGCAGCA
AAGGCAAGTGT----
 A C G T A C G T C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAAGTGCAGCA
AACAGGTGT----
 C A G T T A C G A G T C G T C A C G T A C T A G C G A T A C T G G T A C T C G A C T A G A T G C C T G A
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T