Information for 15-CATGGTTGGC (Motif 47)

A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C G T A C C G T A C G T A A G T C G T A C C G T A A C G T A C T G
p-value:1e-4
log p-value:-1.098e+01
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.0 +/- 26.5bp
Average Position of motif in Background33.9 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CATGGTTGGC
CCATTGTTYB-
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CATGGTTGGC---
----NTTGGCANN
 A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CATGGTTGGC--
---GGTTGGCAT
 A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CATGGTTGGC-
-----TTGGCA
 A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CATGGTTGGC
-ATTGTTA--
 A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGGTTGGC
CCATTGTTC--
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CATGGTTGGC-----
NGTAGGTTGGCATNNN
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATGGTTGGC
CCWTTGTYYB-
 A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATGGTTGGC
NCCATTGTTC--
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CATGGTTGGC---
---NNTTGGCANN
 A G T C C G T A A C G T A C T G A C T G A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C