Information for 12-WCSTACACGG (Motif 43)

C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G
Reverse Opposite:
A T G C A G T C A C T G A C G T A C T G A G C T T C G A A T G C A C T G G C A T
p-value:1e-5
log p-value:-1.261e+01
Information Content per bp:1.695
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif177.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets42.2 +/- 31.5bp
Average Position of motif in Background42.9 +/- 42.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:WCSTACACGG-
-----CACGCA
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:WCSTACACGG---
---GGCACGCGTC
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:WCSTACACGG--
----GCACGTNC
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:WCSTACACGG--
----GCACGTAY
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:WCSTACACGG--
--TBGCACGCAA
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---WCSTACACGG---
NNTTTGCACACGGCCC
 A C G T A C G T A C G T C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Arnt/MA0004.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:WCSTACACGG-
-----CACGTG
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:WCSTACACGG----
----GCACGTACCC
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:WCSTACACGG-
---BGCACGTA
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T
A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HEY1/MA0823.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:WCSTACACGG---
---GACACGTGCC
 C G T A T G A C A T C G A G C T C T G A A G T C G T C A A G T C C T A G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C