Information for 20-CCAGTGGGCACAT (Motif 42)

A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
Reverse Opposite:
C T G A A C G T A C T G A C G T A C T G A G T C G T A C A G T C C G T A A G T C C G A T A C T G A C T G
p-value:1e-5
log p-value:-1.369e+01
Information Content per bp:1.917
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 22.0bp
Average Position of motif in Background69.3 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCAGTGGGCACAT
--NGTGGGCAT--
 A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCAGTGGGCACAT----
TACATGTGCACATAAAA
 A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCAGTGGGCACAT----
CAGATGTGCACATACGT
 A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCAGTGGGCACAT--
NNNNTTGGGCACNNCN
 A C G T A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAGTGGGCACAT
TCACCTCTGGGCAG--
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAGTGGGCACAT-
GGGCCGTGTGCAAAAA
 A C G T A C G T A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGTGGGCACAT
--GGTTGGCAT--
 A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCAGTGGGCACAT
GTGCCGTGTGCAAA-
 A C G T A C G T A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCAGTGGGCACAT
TGCCCNNAGGGCA---
 A C G T A C G T A C G T A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCAGTGGGCACAT
--NNTTGGCANN-
 A G T C G T A C C G T A A C T G A C G T A C T G A C T G A C T G A G T C G T C A A G T C C G T A A G C T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T