Information for 11-CCAGGTCAAG (Motif 39)

G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G G T C A G T A C A G T C A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.907
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif55.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets55.9 +/- 22.3bp
Average Position of motif in Background48.7 +/- 36.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CCAGGTCAAG----
--AGGTCAAGGTCA
 G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CCAGGTCAAG----
--AGGTCAAGGTCA
 G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCAGGTCAAG
ATCAAGGTCA--
 A C G T A C G T G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGTCAAG
TCAAGGTCAN-
 A C G T G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CCAGGTCAAG
--AGGTCA--
 G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCAGGTCAAG
TRAGGTCA--
 G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CCAGGTCAAG
CAAGGHCANV
 G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CCAGGTCAAG
TCAAGGTCAT-
 A C G T G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCAGGTCAAG---
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCAGGTCAAG--
CAAAGGTCAAGGG
 A C G T G T A C G T A C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G