Information for 16-CCTGHCCTGCTCAHGT (Motif 25)

A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G C T T A C G C G T A C T A G A T G C C G T A C T A G A C T G C G T A A G T C C G T A A C T G T A C G
p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.790
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.9 +/- 22.0bp
Average Position of motif in Background45.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT
--TGACCTYA------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT
--TGACCT--------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCTGHCCTGCTCAHGT
GCTGTG----------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCTGHCCTGCTCAHGT
NVCAKCTGGNNNCCAGMTGB
 A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
T A C G T G A C T G A C C G T A A C T G T A G C C G A T A C T G A T C G A G C T A T G C T C G A T A G C G T A C C G T A A C T G T G A C G C A T A C T G A C T G

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT-------
ACCGCCNTCCACGTGTANNGACA
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G A T C C A T G T A G C G A T C G A C T C A G T T G A C G T A C C T G A A G T C T C A G G A C T A C T G A C G T G T C A C T G A G A C T T A C G C T G A G A T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT
-GTGACCTT-------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT
--TGACCYCT------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT
--TGACCTTGAT----
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CCTGHCCTGCTCAHGT-
--TGACCTTTTGACCTC
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T A C G T
A C G T A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CCTGHCCTGCTCAHGT
CCTCACCTG-------
 A T G C A G T C A C G T A C T G G A C T A G T C A G T C A C G T A T C G A G T C C G A T A T G C C T G A G A C T A C T G A C G T
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T