Information for 11-CCTGKGCCATGMTGCT (Motif 17)

A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G T A G C G T C A A C T G A T G C G T C A A C G T A T C G A C T G A G T C G T C A A G T C C G T A A T C G C T A G
p-value:1e-11
log p-value:-2.592e+01
Information Content per bp:1.777
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.4 +/- 27.3bp
Average Position of motif in Background64.2 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT-
---GTGCCACGCGACTG
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
--CGTGCCAAG-----
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTGKGCCATGMTGCT
-CTGTTCCTGG-----
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
-ATTTCCCAGVAKSCY
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
ACTATGCCAACCTACC
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCTGKGCCATGMTGCT
----TGCCAA------
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
---ATGCCAACC----
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
--GGTGCCAAGT----
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGKGCCATGMTGCT
NNNNTTGTGTGCTTNN-----
 A C G T A C G T A C G T A C G T A C G T A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CCTGKGCCATGMTGCT
---TTGCCAAG-----
 A G T C T A G C C G A T A C T G A C G T A C T G A G T C A T G C C G T A A C G T A T C G G T A C A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T