Information for 10-YAGGAGGCACCCAGCA (Motif 12)

A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A
Reverse Opposite:
C A G T T A C G A T G C G C A T A C T G A C T G A T C G A G C T A C T G A T G C G T A C G A C T A T G C G A T C A G C T T C G A
p-value:1e-12
log p-value:-2.779e+01
Information Content per bp:1.480
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 16.5bp
Average Position of motif in Background44.7 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:YAGGAGGCACCCAGCA
-AGGTGNCAGACAG--
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA-----
------CCACACAGCAGGAGA
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:YAGGAGGCACCCAGCA--
----TGGCAGNCTGCCAG
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA-----
------CCACACAGCAGGAGA
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA--
----TGGCACCATGCCAA
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA-----
------GAGCACAGCAGGACA
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----YAGGAGGCACCCAGCA
GCCASCAGGGGGCGCYVNNG-
 A C G T A C G T A C G T A C G T A C G T A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:YAGGAGGCACCCAGCA
-GGTTGGCAT------
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.51
Offset:9
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA-----
---------CACAGCAGGGGG
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:YAGGAGGCACCCAGCA
-AGGTGHCAGACA---
 A G C T T C G A C T A G T A C G C T G A C A T G A T C G T G A C C T G A T A G C T G A C T G A C C G T A T A C G A T G C G T C A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T