Information for 5-RYRTGTSCATYYT (Motif 11)

C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
Reverse Opposite:
C G T A C T G A C T G A C G T A A C G T A C T G A T G C G T C A A G T C C G T A A G T C T C A G A G C T
p-value:1e-12
log p-value:-2.779e+01
Information Content per bp:1.824
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.2 +/- 21.9bp
Average Position of motif in Background49.9 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RYRTGTSCATYYT
GGGCCGTGTGCAAAAA
 A C G T A C G T A C G T C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:RYRTGTSCATYYT-
---TGTGGATTNNN
 C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RYRTGTSCATYYT
GHATATKCAT---
 C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RYRTGTSCATYYT
TTCATTTGCATAT-
 A C G T C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----RYRTGTSCATYYT
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RYRTGTSCATYYT--
NTNTATGTGCACATNNN
 A C G T A C G T C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--RYRTGTSCATYYT--
NNGTATGTGCACATNNN
 A C G T A C G T C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RYRTGTSCATYYT
--ATTTGCATAT-
 C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RYRTGTSCATYYT
--ATTTGCATAA-
 C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RYRTGTSCATYYT
-NNTGTGGATTSS
 C T G A A G T C C T A G A C G T A C T G A C G T A T C G A G T C C G T A A C G T A G C T A G C T A C G T
A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G