Information for 10-RCYYCTCVBTGCT (Motif 26)

C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T
Reverse Opposite:
C T G A A T C G G T A C C G T A T C G A A C T G A C T G C G T A A C T G C T A G C T A G A C T G G A C T
p-value:1e-7
log p-value:-1.687e+01
Information Content per bp:1.683
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif90.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets33.8 +/- 22.9bp
Average Position of motif in Background49.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RCYYCTCVBTGCT------
--CGAACAGTGCTCACTAT
 C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RCYYCTCVBTGCT-
GACCCCCCGCTGCGC
 A C G T C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:RCYYCTCVBTGCT---
----CCCCCTGCTGTG
 C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--RCYYCTCVBTGCT
TTCCCCCTAC-----
 A C G T A C G T C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:RCYYCTCVBTGCT
----TTAAGTGC-
 C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T
A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:RCYYCTCVBTGCT------
----NCCGTTGCTANGNGN
 C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-RCYYCTCVBTGCT
GACCCCCCGCTGTG
 A C G T C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-RCYYCTCVBTGCT-
GACCCCCCGCTGTGC
 A C G T C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:RCYYCTCVBTGCT-
----TTAAGTGCTT
 C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:10
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----RCYYCTCVBTGCT----
NTTMRCACNNNVSTGYKAANT
 A C G T A C G T A C G T A C G T C T G A A G T C A G T C A G C T G T A C C G A T G T A C T G A C A G C T A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T
G C A T A G C T G A C T T G C A C T G A T A G C C T G A A T G C G A T C A G C T T G C A T C A G A T C G G A C T T A C G G A C T A C T G C T G A C T G A G C T A G C A T