Information for 6-GAACCGDGTC (Motif 20)

A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C
Reverse Opposite:
A C T G G T C A G T A C G C A T T G A C T A C G A C T G C G A T A C G T A T G C
p-value:1e-8
log p-value:-1.911e+01
Information Content per bp:1.695
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.26%
Number of Background Sequences with motif297.0
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets50.8 +/- 29.5bp
Average Position of motif in Background44.9 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAACCGDGTC-----
CGCGCCGGGTCACGTA
 A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAACCGDGTC-----
AGAGCGGGGTCAAGTA
 A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

SPDEF/MA0686.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAACCGDGTC
TACATCCGGGT-
 A C G T A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAACCGDGTC-----
NTNNNAGGAGTCTCNTN
 A C G T A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAACCGDGTC
AAACCGGTTT
 A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C
T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAACCGDGTC------
TNNNNGGTGTCATNTNT
 A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GAACCGDGTC---
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PKNOX2/MA0783.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAACCGDGTC-
TGACAGGTGTCA
 A C G T A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAACCGDGTC
-AACCGANA-
 A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C
A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAACCGDGTC-
-AAYTAGGTCA
 A T C G G T C A C G T A T G A C A T G C A C T G C G T A A C T G A C G T T G A C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A