Information for 4-GGTCATCAGTCAGCTK (Motif 2)

A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
Reverse Opposite:
G T A C C T G A C T A G A T G C A C G T A C T G G T C A A G T C C G A T A T C G T C G A A C G T A C T G C T G A A G T C A G T C
p-value:1e-14
log p-value:-3.264e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 26.8bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGTCATCAGTCAGCTK
RGCCATYAATCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGTCATCAGTCAGCTK
--TCATCAATCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GGTCATCAGTCAGCTK
-----TGAGTCAGCA-
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGTCATCAGTCAGCTK
-GYCATCMATCAT---
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGTCATCAGTCAGCTK
TGACAGCTGTCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGTCATCAGTCAGCTK
GGCCATAAATCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGTCATCAGTCAGCTK
TGACACCTGTCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGTCATCAGTCAGCTK
-GCCATAAATCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGTCATCAGTCAGCTK
TGACACCTGTCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGTCATCAGTCAGCTK
GGCCATAAATCA----
 A C T G A C T G A G C T G T A C C G T A A C G T A T G C C G T A C T A G A C G T A G T C C G T A A T C G A G T C G A C T A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T