Information for 14-GCATTTGGTCAGGTCA (Motif 20)

A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A A G T C G T A C A C G T A C T G C G T A A T G C G T A C G T C A C G T A C T G A A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 23.6bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GCATTTGGTCAGGTCA
--------TRAGGTCA
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.57
Offset:10
Orientation:forward strand
Alignment:GCATTTGGTCAGGTCA
----------AGGTCA
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.54
Offset:9
Orientation:forward strand
Alignment:GCATTTGGTCAGGTCA-
---------AAGGTCAC
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCATTTGGTCAGGTCA
-AAYTAGGTCA-----
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCATTTGGTCAGGTCA
AGAGCGGGGTCAAGTA-
 A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCATTTGGTCAGGTCA
CACGGCAGTTGGTNN-----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GCATTTGGTCAGGTCA
NNNTGGCAGTTGGTNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T A C G T A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCATTTGGTCAGGTCA-
-----CGGTGACGTCAC
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----GCATTTGGTCAGGTCA
GTAGGTCACTGGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T A C G T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GCATTTGGTCAGGTCA-
-----NGATGACGTCAT
 A C T G A G T C C G T A A G C T A C G T A C G T A C T G A T C G A C G T A G T C C G T A A C T G C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T