Information for 5-GCCCTGTCCTGGG (Motif 7)

A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
Reverse Opposite:
A T G C G T A C G T A C T C G A A C T G A C T G G C T A G A T C C G T A C A T G A C T G C A T G A T G C
p-value:1e-12
log p-value:-2.930e+01
Information Content per bp:1.789
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif38.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets43.8 +/- 22.0bp
Average Position of motif in Background60.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG
---CTGACCTTTG
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGTCCTGGG-------
GGCGCTGTCCATGGTGCTGAA
 A C G T A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG
----TGACCT---
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG
----TGACCTYA-
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG
--BNTGDCCTTG-
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG-
----TGACCTTGAV
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G A C G T
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCCTGTCCTGGG------
GGAGCTGTCCATGGTGCTGA
 A C G T A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCCTGTCCTGGG---
NNNNTGACCCGGCGCG
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCCTGTCCTGGG
--CCTCACCTG--
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G
A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCCCTGTCCTGGG--
-----WDNCTGGGCA
 A T C G G T A C G T A C G T A C A C G T C A T G C G A T A G T C A G T C A C G T A C T G C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A