Information for 1-CAGGCAGRCAGGAAGA (Motif 1)

A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
Reverse Opposite:
A G C T A T G C C G A T A C G T A G T C G T A C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A C G T C T A G
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.799
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.8 +/- 17.3bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCAGRCAGGAAGA
SCAGYCADGCATGAC--
 A C G T A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGRCAGGAAGA
---CCAGACAG-----
 A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGRCAGGAAGA
---CCAGACRSVB---
 A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CAGGCAGRCAGGAAGA-
-------ACAGGAAGTG
 A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGGCAGRCAGGAAGA
GCAGCCAAGCGTGACN-
 A C G T A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGRCAGGAAGA
CAAATCCAGACATCACA-
 A C G T A C G T A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGGCAGRCAGGAAGA
GGAAGGAAGGAAGGAAGG
 A C G T A C G T A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CAGGCAGRCAGGAAGA
------AACAGGAAGT
 A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAGGCAGRCAGGAAGA
---BCAGACWA-----
 A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGGCAGRCAGGAAGA
AGGTGNCAGACAG-----
 A C G T A C G T A G T C G T C A A C T G T A C G A G T C C G T A A C T G C T A G A G T C C G T A A C T G C T A G G T C A C G T A A T C G T C G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T