Information for 5-KRGYGGATGGCAS (Motif 5)

A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G A T G C G T A C C G T A A C G T A G T C A G T C C T G A A G T C A G T C G T C A
p-value:1e-13
log p-value:-3.052e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.8 +/- 13.4bp
Average Position of motif in Background45.3 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:KRGYGGATGGCAS---
NGTAGGTTGGCATNNN
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
----GGTTGGCAT
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
--GTGGAT-----
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:KRGYGGATGGCAS-
-----NTTGGCANN
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
-----CTTGGCAA
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
-AACAGATGGC--
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:KRGYGGATGGCAS--
---GGGATTGCATNN
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
--GTTAATGGCC-
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.58
Offset:6
Orientation:forward strand
Alignment:KRGYGGATGGCAS
------TTGGCA-
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KRGYGGATGGCAS
----NGTGGGCAT
 A C G T C T A G A C T G A G C T A C T G C T A G C G T A A C G T A C T G A T C G A G T C C G T A A T C G
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T