Information for 4-TGCAGCWGRGCAKAAY (Motif 7)

A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
Reverse Opposite:
T C A G A G C T A C G T G T A C C G A T A T C G A T G C A G T C A G T C C G T A A C T G A G T C A G C T A C T G A G T C C T G A
p-value:1e-13
log p-value:-3.152e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.1 +/- 23.5bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCAGCWGRGCAKAAY
CGCAGCTGCG------
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCAGCWGRGCAKAAY
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCAGCWGRGCAKAAY
ANCAGCTG--------
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGCAGCWGRGCAKAAY
-GCAGCTGTNN-----
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCAGCWGRGCAKAAY-
-GCAGCCAAGCGTGACN
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCAGCWGRGCAKAAY
NVCAGCTGBBNN----
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGCAGCWGRGCAKAAY
--WDNCTGGGCA----
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGCWGRGCAKAAY
CAGCAGCTGN-------
 A C G T A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGCWGRGCAKAAY
NNNNAGCAGCTGCTGAN---
 A C G T A C G T A C G T A C G T A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGCAGCWGRGCAKAAY
-HCAGCTGDTN-----
 A G C T A C T G A G T C C T G A A C T G A G T C C G A T A C T G C T A G A T C G A T G C C G T A A C T G C G T A C T G A A G T C
A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T A C G T